Zhou, T., Li, Z., Huang,W., Zhou, E., Jiang, Y., Bai, Y., Xu, C., Lu, W., Su, K., Xu, C*, Yi, H* .(2025). Genome-Wide Analyses Identify circAQR, A circular RNA Suppressing Proliferation but Promoting Migration and Invasion in Thyroid Cancer. npj Precision Oncology. In press
Zhang, L., Deng, X., Ma, W., Zhou, T., & Xu, C*. (2025). Regulation and functions of alternative polyadenylation in fungi. Mycology, 1-16.
Li, Z., Mi, K., & Xu, C*. (2025). Most m5C modifications in mammalian mRNAs are nonadaptive. Molecular Biology and Evolution, 42(1), msaf008.
Li, Z., Sarker, B., Zhao, F., Zhou, T., Zhang, J., & Xu, C*. (2024). COL: a method for identifying putatively functional circular RNAs. Journal of genetics and genomics, S1673-8527.
Zhou, T., Li, Z., Jiang, Y., Su, K., Xu, C*. and Yi, H.*, 2024. Emerging roles of circular RNAs in regulating the hallmarks of thyroid cancer. Cancer Gene Therapy, pp.1-10.
Xu, C*., Kadosh, D., Sun, D., Zeng, G., & Gao, Y. Z. (2023). Omics-originated exploration of pathogenic patterns and molecular mechanisms in human and animal fungal pathogens. Frontiers in Microbiology, 14.
Hao, Y., Shao, L., Hou, J., Zhang, Y., Ma, Y., Liu, J., Xu, C., Chen, F., Cao, L.H. and Ping, Y., 2023. Resveratrol and Sir2 reverse sleep and memory defects induced by amyloid precursor protein. Neuroscience Bulletin, 39(7), pp.1117-1130.
Xu, H., Li, C., Xu, C., & Zhang, J. (2023). Chance promoter activities illuminate the origins of eukaryotic intergenic transcriptions. Nature Communications, 14(1), 1826.
Zhang, J., & Xu, C.(2022) Gene product diversity: adaptive or not? Trends in Genetics, 38(11):1112-1122.
Xu, C. & J. Zhang (2021) Mammalian circular RNAs result largely from splicing errors. Cell Reports, 36(4), 109439. (IF5=10.4)
Xu, C. , & Zhang, J. (2020). Mammalian alternative translation initiation is mostly nonadaptive. Molecular Biology and Evolution. Mar 7. pii: msaa063. doi: 10.1093/molbev/msaa063. (IF5=18.7)
Xu, C. , & Zhang, J. (2020) A different perspective on alternative cleavage and polyadenylation. Nature Review Genetics, doi: 10.1038/s41576-019-0198-z (IF5=52.0)
Xu, C. , Park, J. K., & Zhang, J. (2019). Evidence that alternative transcriptional initiation is largely nonadaptive. PLoS biology, 17(3), e3000197. (IF5=9.6)
Zhang, Q., Chen, X., Xu, C. , Zhao, H., Zhang, X., Zeng, G., ... & Meng, Y. (2019). Horizontal gene transfer allowed the emergence of broad host range entomopathogens. Proceedings of the National Academy of Sciences, 116(16), 7982-7989. (IF5=12.3)
Xu, C. , & Zhang, J. (2018). Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive. Cell systems, 6 (6), 734-742.e4 (IF5=13.6)
Zeng, G., Chen, X., Zhang, X., Zhang, Q.,Xu, C. , Mi, W., ..., & Fang, W. (2017). Genome‐wide identification of pathogenicity, conidiation and colony sectorization genes in Metarhizium robertsii. Environmental microbiology, 19(10), 3896-3908. (IF5=6.4)
Liu, R. +, Xu, C. +, Zhang, Q., Wang, S., & Fang, W. (2017). Evolution of the chitin synthase gene family correlates with fungal morphogenesis and adaption to ecological niches. Scientific Reports. 7:44527 (IF5=5.1)
Guo, N., Qian, Y., Zhang, Q., Chen, X., Zeng, G., Zhang, X., ... Xu, C., Raymond J. St. Leger & Fang, W. (2017). Alternative transcription start site selection in Mr-OPY2 controls lifestyle transitions in the fungus Metarhizium robertsii. Nature Communications, 8(1), 1565. (IF5=15.8)
Xu, C., Liu, R., Zhang, Q., Chen, X., Qian, Y., & Fang, W. (2017). The diversification of evolutionarily conserved MAPK cascades correlates with the evolution of fungal species and development of lifestyles. Genome biology and evolution, evw051. (IF5=4.1)
Chen, X. +, Xu, C. +, Qian, Y., Liu, R., Zhang, Q., Zeng, G., ... & Fang, W. (2016). MAPK cascade‐mediated regulation of pathogenicity, conidiation and tolerance to abiotic stresses in the entomopathogenic fungus Metarhizium robertsii. Environmental microbiology. 18(3), 1048–1062 (IF5=6.4)
Mao, Y., Zhang, Y., Xu, C., & Qiu, Y. (2016). Comparative transcriptome resources of two Dysosma species (Berberidaceae) and molecular evolution of the CYP719A gene in Podophylloideae. Molecular ecology resources. 16(1), 228-241. (IF5=8.7)
Xu, C., Zhang, X., Qian, Y., Chen, X., Liu, R., Zeng, G., ... & Fang, W. (2014). A High-Throughput Gene Disruption Methodology for the Entomopathogenic Fungus Metarhizium robertsii. PloS one, 9(9), e107657. (IF5=3.8)
Zhao, H., Xu, C., Lu, H. L., Chen, X., Leger, R. J. S., & Fang, W. (2014). Host-to-Pathogen Gene Transfer Facilitated Infection of Insects by a Pathogenic Fungus. PLoS pathogens, 10(4), e1004009. (IF5=7.5)
Shi, W., Guo, Y., Xu, C., Tan, S., Miao, J., Feng, Y., ... & Fang, W. (2014). Unveiling the mechanism by which microsporidian parasites prevent locust swarm behavior. Proceedings of the National Academy of Sciences, 111(4), 1343-1348. (IF5=12.3)
Xu, C., Liu, L., Zhang, Z., Jin, D., Qiu, J., & Chen, M. (2013). Genome-scale metabolic model in guiding metabolic engineering of microbial improvement. Applied microbiology and biotechnology, 97(2), 519-539. (IF5=4.7)
Xu, C., Zhao, C., He, W., & Qiu, J (2011). Selection of Bacillus cereus resisting to jingangmycin aqua. Acta Agriculturae Zhejiangensis,2011,23(6):1187-1191.